• 609 Citations
  • 13 h-Index
20022019
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Fingerprint Fingerprint is based on mining the text of the experts' scientific documents to create an index of weighted terms, which defines the key subjects of each individual researcher.

Genome Medicine & Life Sciences
Genes Chemical Compounds
Microbiota Medicine & Life Sciences
Dengue Virus Medicine & Life Sciences
Glucocorticoids Medicine & Life Sciences
Pathogens Chemical Compounds
Bartonella Medicine & Life Sciences
DNA Medicine & Life Sciences

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Projects 2013 2019

Research Output 2002 2019

  • 609 Citations
  • 13 h-Index
  • 48 Article
  • 11 Conference contribution

Broom: application for non-redundant storage of high throughput sequencing data

Albayrak, L., Khanipov, K., Golovko, G. & Fofanov, Y., Jan 1 2019, In : Bioinformatics (Oxford, England). 35, 1, p. 143-145 3 p.

Research output: Contribution to journalArticle

Information Storage and Retrieval
Viperidae
Computational Biology
Sequencing
High Throughput

Detection of multi-dimensional co-exclusion patterns in microbial communities

Albayrak, L., Khanipov, K., Golovko, G. & Fofanov, Y., Nov 1 2018, In : Bioinformatics (Oxford, England). 34, 21, p. 3695-3701 7 p.

Research output: Contribution to journalArticle

Microbiota
Pipelines
Bioinformatics
Microorganisms
Availability

Exploration of natural alignment scoring rules and clustering thresholds for bacterial core/pan genome analysis

Albayrak, L., Khanipov, K., Rojas, M., Golovko, G., Pimenova, M., Fofanov, Y. & Kosoy, M., Jan 8 2018, Proceedings - 2017 IEEE 17th International Conference on Bioinformatics and Bioengineering, BIBE 2017. Institute of Electrical and Electronics Engineers Inc., Vol. 2018-January. p. 249-254 6 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Scoring
Cluster Analysis
Genome
Alignment
Genes
6 Citations

GPR43 mediates microbiota metabolite SCFA regulation of antimicrobial peptide expression in intestinal epithelial cells via activation of mTOR and STAT3

Zhao, Y., Chen, F., Wu, W., Sun, M., Bilotta, A. J., Yao, S., Xiao, Y., Huang, X., Eaves-Pyles, T., Golovko, G., Fofanov, Y., D'Souza, W., Zhao, Q., Liu, Z. & Cong, Y., May 1 2018, In : Mucosal Immunology. 11, 3, p. 752-762 11 p.

Research output: Contribution to journalArticle

Volatile Fatty Acids
Microbiota
Epithelial Cells
Peptides
beta-Defensins

Microbiome interaction networks and community structure from laboratory-reared and field-collected Aedes aegypti, Aedes albopictus, and Culex quinquefasciatus mosquito vectors

Hegde, S., Khanipov, K., Albayrak, L., Golovko, G., Pimenova, M., Saldaña, M. A., Rojas, M. M., Hornett, E. A., Motl, G. C., Fredregill, C. L., Dennett, J. A., Debboun, M., Fofanov, Y. & Hughes, G. L., Sep 10 2018, In : Frontiers in Microbiology. 9, SEP, 2160.

Research output: Contribution to journalArticle

Culex
Aedes
Microbiota
Culicidae
Microbial Interactions